Boss CH3000D remaining on and thumping

Have a Boss CH3000D monoblock here that has an issue where the amp would thump the subwoofer in and out repeatedly when powered up and the amp powers up with remote but remains on when remote is removed and only turns off when RCAs are unplugged.
I found that the bass boost knob when turned would cause the subwoofer to pull in and out also. The knob was swapped out but the problem still exists. After changing the bass boost knob the amp would turn on and had clean output when tested in a vehicle but the thumping returned at high output level and then when the remote was turned off, the amp remained on until the RCA plugs were removed. There were a few strands of wire still soldered to the case of the input voltage selector switch as if there was a ground jumper that came off. I resoldered a wire to it and screwed it down to the regulators heatsink clamp but nothing changed.
 

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Same points, what's the DC voltage with the amp on?

Is the shield of your signal source grounded?

Compare the voltage on the terminals of the SG3525 with the amp on and again when the amp remote removed but RCAS plugged in.

Then again when you remove the RCAs and the amp shuts off.

No need to post all. Just note which ones change in each scenario.
 
Went to acquire the above requested information, and the amp went into protection. Posting the KA3525A voltages:
1) 2.6mv
2) 5V
3) 15mv
4) 213mv
5) 2.1V
6) 3.6V
7) 2V
8) 271mv
9) 5.5V
10) 24mv
11) 5.3mv
12) 2.5mv
13) 11.8V
14) 5.3mv
15) 11.8V
16) 5V
 
What happened is that I powered the amp up without RCAs connected and then turned off remote power. The green led remained on and after a few seconds it started to flicker a bit and there was an 'arcing' sound coming from the area of the traces running between the rail caps and the transformer, under the 'aged fixative'. I could see visible flashes, and then it stopped and the amp shut off. Afterwards, it would only power up into protection. I removed the fixative from the area expecting to find a burnt/separated trace underneath, but it wasn't.

The only other thing is that pressing on the circuit board in the area of the bass boost knob and that general end of the amplifier would cause the protection light to turn off when it was remaining on after remote power was removed.
 

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Another odd thing is that if I touch D16 and/or R39 with my finger, the protection LED will illuminate. The area is shown with the yellow box in the pics.
 

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Removed all the fixative from the circuit board and cleaned it off of all the traces, resistor and diode legs that it was on. The amp is currently still powering up into protection.
KA3525 voltages:
1) 3.7mv
2) 5V
3) 16mv
4) 211mv
5) 2.1V
6) 3.6V
7) 2V
8) 271mv
9) 5.5V
10) 24mv
11) 5.9mv
12) 3.1mv
13) 11.8V
14) 5.3mv
15) 11.8V
16) 5V
 
The moment the wire from pin16 touches the pin8 terminal, there is a loud buzz from the amp so I didn't hold it on any longer. The 5v is pulled down on that jumper wire and the fan speed drops as well but the mains limiter does not light up though.