0.1uf in parallel with 4.7uf input coupling cap, why?

That is often done (small C in parallel with big C) to enhance high frequency performance of the combo. Small cap bypasses stray inductance (a limiter of HF performance) of the larger one. With some larger caps, that may not be necessary because of their design which would minimize the inductance.
 
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Ha! Very different... Usually these bypass capacitors are seen in loudspeaker crossovers. They allow for the use of a more economical main capacitor, complemented by a high-quality 0.01 μF bypass capacitor. This approach has improved performance in my experience, although your mileage may vary. However, I have yet to encounter the use of bypass capacitors in amplifiers or preamps.
 
Just wondering why a 4.7uf input coupling cap would also have a .1uf cap in parallel with it. Both are film caps.
Here is an example from the NAD C 320beee. The tone control circuit has polarized caps in the input and output bypassed by 0.1uf. C325 has rather big because the tone circuit is less than 4k.
tone1.png
 
Hi. If electrolytic capacitor would dry, you still have high frequencies sound , and by symptoms you know what you need to do - replace caps. But in your case, shunt one film cap with another film is not frequent. Probably it reduces overall ac resistance of capacitor, at wider frequency range.
 
If holes don't match actual part, only one idea - initially it should have different part, but for some reason changed to different. Again, price - film capacitors are expensive , especially higher capacity and small size combination, but for lower voltage.