The amp was clipping for sure. There were some music bass notes playing a little longer than I thought so it's maybe it don't know ?
The JBL was spec 40Hz +-3dB.
The driver is rated for 600 watts, if a sustained bass line at 50Hz (box tuning, Fb, impedance minima) was clipped, the Yamaha P7000S could produce around double it's rated power until the magic smoke was released.
A slow attack (200ms) limiter set to limit at or below 40v could have prevented the burnt coil, while still allowing peaks through.
The "oscillating issue at 360Hz" is the port resonance, not really an issue as it would not be excited when crossed over in the 100Hz range as usual. The spec of 40Hz +/-3dB obviously is not true with a 50Hz Fb.
Presently, the cabinet alignment is near "flat", tuning lower in the same small box will roll off the low end.
Lowering the Fb to 40Hz by extending the port(s) would trade more 40Hz for less 50-60Hz.
Art